If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ), 'gf_id' => 'HOM05D000925', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000925' ), 'data_identifier' => 'HOM05D000925', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000925', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p17730' => 'bna', 'A03p24190' => 'bna', 'A03p33790' => 'bna', 'A04p24180' => 'bna', 'A04p32680' => 'bna', 'A05p03720' => 'bna', 'A05p42870' => 'bna', 'A06p05690' => 'bna', 'A06p38050' => 'bna', 'A08p34970' => 'bna', 'A09p10800' => 'bna', 'A09p43360' => 'bna', 'A09p67260' => 'bna', 'A10p04570' => 'bna', 'Aa31LG11G8600' => 'aar', 'Aa31LG1G25080' => 'aar', 'Aa31LG1G8470' => 'aar', 'Aa31LG2G16410' => 'aar', 'Aa31LG5G5370' => 'aar', 'Aa31LG8G13270' => 'aar', 'Aa31sc20G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1636' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1262' => 'aag', 'Actinidia00435' => 'ach', 'Actinidia12054' => 'ach', 'Actinidia16485' => 'ach', 'Actinidia34616' => 'ach', 'Actinidia35966' => 'ach', 'Actinidia36492' => 'ach', 'Ah.02g124250' => 'amhyb', 'Ah.04g162180' => 'amhyb', 'Ah.06g192100' => 'amhyb', 'Ah.07g201770' => 'amhyb', 'AL1G15810' => 'aly', 'AL1G19220' => 'aly', 'AL3G14760' => 'aly', 'AL3G47350' => 'aly', 'AL3G47360' => 'aly', 'AL4G26820' => 'aly', 'AL4G42020' => 'aly', 'AL5G30470' => 'aly', 'AL6G40710' => 'aly', 'AL762U10020' => 'aly', 'AL7G17400' => 'aly', 'Aqoxy1G02424' => 'aox', 'Aqoxy2G04107' => 'aox', 'Aqoxy6G01312' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3RN0DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8610MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AINH12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IM1SIL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEJT95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9K6IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBJ23B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SD34JU' => 'arhy', 'AT1G05870' => 'ath', 'AT1G08790' => 'ath', 'AT2G15590' => 'ath', 'AT2G15610' => 'ath', 'AT2G31560' => 'ath', 'AT2G43340' => 'ath', 'AT3G04700' => 'ath', 'AT3G50350' => 'ath', 'AT4G33985' => 'ath', 'AT5G28690' => 'ath', 'ATR0006G078' => 'atr', 'ATR0693G338' => 'atr', 'ATR0743G147' => 'atr', 'ATR1102G011' => 'atr', 'Atru.chr2.838' => 'acertr', 'Atru.chr3.1556' => 'acertr', 'Atru.chr3.1577' => 'acertr', 'Atru.chr3.330' => 'acertr', 'Atru.chr5.2691' => 'acertr', 'AUR62001051' => 'cqu', 'AUR62001929' => 'cqu', 'AUR62004901' => 'cqu', 'AUR62015421' => 'cqu', 'BcaB01g00623' => 'bca', 'BcaB01g03392' => 'bca', 'BcaB01g04033' => 'bca', 'BcaB03g11863' => 'bca', 'BcaB04g19306' => 'bca', 'BcaB06g29307' => 'bca', 'BcaB07g31786' => 'bca', 'BcaB07g34136' => 'bca', 'BcaC01g00942' => 'bca', 'BcaC01g04354' => 'bca', 'BcaC01g05238' => 'bca', 'BcaC01g05239' => 'bca', 'BcaC01g05941' => 'bca', 'BcaC02g07187' => 'bca', 'BcaC02g12408' => 'bca', 'BcaC04g23044' => 'bca', 'BcaC05g24326' => 'bca', 'BcaC05g24327' => 'bca', 'BcaC05g24328' => 'bca', 'BcaC05g28668' => 'bca', 'BcaC05g29916' => 'bca', 'BcaC05g30179' => 'bca', 'BcaC07g38448' => 'bca', 'BcaC07g39494' => 'bca', 'BcaC07g42103' => 'bca', 'BcaC07g42104' => 'bca', 'BcaC07g42105' => 'bca', 'BcaNung01721' => 'bca', 'BcaNung02108' => 'bca', 'BcaNung03355' => 'bca', 'BcaNung06268' => 'bca', 'BolC3t14442H' => 'bol', 'BolC3t15242H' => 'bol', 'BolC3t16398H' => 'bol', 'BolC3t20906H' => 'bol', 'BolC4t22074H' => 'bol', 'BolC4t27582H' => 'bol', 'BolC4t28540H' => 'bol', 'BolC5t29197H' => 'bol', 'BolC5t29445H' => 'bol', 'BolC5t33516H' => 'bol', 'BolC5t34914H' => 'bol', 'BolC7t44553H' => 'bol', 'BolC7t46451H' => 'bol', 'BolC8t48855H' => 'bol', 'BolC8t50161H' => 'bol', 'BolC8t52683H' => 'bol', 'BolC9t54164H' => 'bol', 'BraA03t11037Z' => 'bra', 'BraA03t11628Z' => 'bra', 'BraA03t12553Z' => 'bra', 'BraA03t15321Z' => 'bra', 'BraA04t17938Z' => 'bra', 'BraA04t18731Z' => 'bra', 'BraA05t19359Z' => 'bra', 'BraA05t22966Z' => 'bra', 'BraA06t23779Z' => 'bra', 'BraA06t26720Z' => 'bra', 'BraA08t33684Z' => 'bra', 'BraA08t35408Z' => 'bra', 'BraA09t36722Z' => 'bra', 'BraA09t39805Z' => 'bra', 'BraA09t42059Z' => 'bra', 'BraA10t42721Z' => 'bra', 'C03p20810' => 'bna', 'C03p28830' => 'bna', 'C03p41090' => 'bna', 'C03p86180' => 'bna', 'C04p04410' => 'bna', 'C04p70370' => 'bna', 'C05p04230' => 'bna', 'C05p06860' => 'bna', 'C05p48070' => 'bna', 'C05p62600' => 'bna', 'C07p40160' => 'bna', 'C07p60110' => 'bna', 'C08p12170' => 'bna', 'C08p25400' => 'bna', 'C08p51550' => 'bna', 'C09p12770' => 'bna', 'CAN.G1041.32' => 'can', 'CAN.G134.76' => 'can', 'CAN.G65.186' => 'can', 'CAN.G660.6' => 'can', 'CANSAT01G3177' => 'cansat', 'CANSAT25G1617' => 'cansat', 'CANSAT25G3221' => 'cansat', 'CANSAT54G2784' => 'cansat', 'CARHR005410' => 'chi', 'CARHR008710' => 'chi', 'CARHR078930' => 'chi', 'CARHR105930' => 'chi', 'CARHR105940' => 'chi', 'CARHR125210' => 'chi', 'CARHR138420' => 'chi', 'CARHR159810' => 'chi', 'CARHR185300' => 'chi', 'CARHR242120' => 'chi', 'Carub.0001s0523' => 'cru', 'Carub.0001s0813' => 'cru', 'Carub.0003s0385' => 'cru', 'Carub.0003s2936' => 'cru', 'Carub.0003s2937' => 'cru', 'Carub.0004s1286' => 'cru', 'Carub.0004s2580' => 'cru', 'Carub.0005s1666' => 'cru', 'Carub.0006s2595' => 'cru', 'Carub.0007s0641' => 'cru', 'Ca_09428_v3' => 'car', 'Ca_10040_v3' => 'car', 'Ca_11406_v3' => 'car', 'Ca_18692_v3' => 'car', 'Cc02_g18850' => 'ccan', 'Cc02_g30850' => 'ccan', 'Cc07_g05980' => 'ccan', 'CDE02G0100' => 'cde', 'CDE04G2954' => 'cde', 'CDE05G2675' => 'cde', 'CDE05G3329' => 'cde', 'CDE08G0581' => 'cde', 'CDE08G1149' => 'cde', 'CDE09G0359' => 'cde', 'Cfa000992' => 'cfa', 'Cfa004022' => 'cfa', 'Cfa004532' => 'cfa', 'Ciclev10022453m.g' => 'ccl', 'Ciclev10026655m.g' => 'ccl', 'Ciclev10029483m.g' => 'ccl', 'Ciclev10030288m.g' => 'ccl', 'CiPaw.01G018300' => 'cil', 'CiPaw.01G102100' => 'cil', 'CiPaw.02G008300' => 'cil', 'CiPaw.02G056000' => 'cil', 'CiPaw.05G007400' => 'cil', 'CiPaw.05G258900' => 'cil', 'CiPaw.07G068700' => 'cil', 'CiPaw.08G122300' => 'cil', 'ClCG00G000490' => 'cla', 'ClCG00G003950' => 'cla', 'ClCG01G016820' => 'cla', 'ClCG02G012570' => 'cla', 'ClCG06G009260' => 'cla', 'ClCG07G015530' => 'cla', 'ClCG08G004360' => 'cla', 'COL.COLO4_11410' => 'col', 'COL.COLO4_14423' => 'col', 'COL.COLO4_15371' => 'col', 'COL.COLO4_32648' => 'col', 'Cpa.g.sc1244.2' => 'cpa', 'Cpa.g.sc55.149' => 'cpa', 'Cpa.g.sc62.5' => 'cpa', 'Cpa.g.sc71.14' => 'cpa', 'CsaV3_1G045510' => 'csa', 'CsaV3_2G016680' => 'csa', 'CsaV3_4G003160' => 'csa', 'CsaV3_6G003800' => 'csa', 'CsaV3_6G043260' => 'csa', 'CSS0004479' => 'camsi', 'CSS0005246' => 'camsi', 'CSS0023625' => 'camsi', 'CSS0026799' => 'camsi', 'CSS0035265' => 'camsi', 'CSS0037387' => 'camsi', 'CSS0038754' => 'camsi', 'CSS0039510' => 'camsi', 'CSS0046792' => 'camsi', 'DCAR_010893' => 'dca', 'DCAR_019242' => 'dca', 'DCAR_029733' => 'dca', 'DCAR_029918' => 'dca', 'Dinv01796' => 'din', 'Dinv15116' => 'din', 'Dinv15717' => 'din', 'Dinv22715' => 'din', 'Dinv29985' => 'din', 'Dinv39850' => 'din', 'Duzib093G1454' => 'dzi', 'Duzib106G0799' => 'dzi', 'Duzib128G0008' => 'dzi', 'Duzib147G0091' => 'dzi', 'Duzib177G0574' => 'dzi', 'Duzib187G0893' => 'dzi', 'Duzib248G1188' => 'dzi', 'Duzib264G1145' => 'dzi', 'ECA232G4130' => 'eca', 'ECA233G2175' => 'eca', 'ECA236G2615' => 'eca', 'ECA238G1425' => 'eca', 'ECA240G2293' => 'eca', 'ECA246G1315' => 'eca', 'ECA248G0605' => 'eca', 'ECA248G2991' => 'eca', 'EL10Ac3g05577' => 'bvu', 'EL10Ac4g09087' => 'bvu', 'EL10Ac6g15746' => 'bvu', 'Eucgr.B02125' => 'egr', 'Eucgr.H01662' => 'egr', 'Eucgr.H04320' => 'egr', 'Eucgr.I00927' => 'egr', 'Eucgr.I01146' => 'egr', 'FAN05G3270' => 'fan', 'FAN07G0453' => 'fan', 'FAN14G2152' => 'fan', 'FAN14G5328' => 'fan', 'FAN15G2689' => 'fan', 'FAN19G2065' => 'fan', 'FAN22G0631' => 'fan', 'FAN23G0138' => 'fan', 'FAN26G2013' => 'fan', 'FAN27G3466' => 'fan', 'FAN28G2874' => 'fan', 'FvH4_1g16050' => 'fve', 'FvH4_2g05911' => 'fve', 'FvH4_4g11250' => 'fve', 'FvH4_6g02671' => 'fve', 'Glyma.01G185900' => 'gma', 'Glyma.03G247700' => 'gma', 'Glyma.07G218300' => 'gma', 'Glyma.10G163100' => 'gma', 'Glyma.11G056100' => 'gma', 'Glyma.19G245750' => 'gma', 'Glyma.20G015200' => 'gma', 'Glyma.20G225700' => 'gma', 'Gohir.A01G230900' => 'ghi', 'Gohir.A02G157400' => 'ghi', 'Gohir.A03G188800' => 'ghi', 'Gohir.A08G215800' => 'ghi', 'Gohir.A10G091800' => 'ghi', 'Gohir.A11G192200' => 'ghi', 'Gohir.A11G249200' => 'ghi', 'Gohir.A11G298900' => 'ghi', 'Gohir.A12G071000' => 'ghi', 'Gohir.A13G040800' => 'ghi', 'Gohir.A13G104200' => 'ghi', 'Gohir.A13G169400' => 'ghi', 'Gohir.D01G221000' => 'ghi', 'Gohir.D02G209500' => 'ghi', 'Gohir.D03G023400' => 'ghi', 'Gohir.D08G139450' => 'ghi', 'Gohir.D08G190200' => 'ghi', 'Gohir.D08G232400' => 'ghi', 'Gohir.D10G096500' => 'ghi', 'Gohir.D11G198900' => 'ghi', 'Gohir.D11G260100' => 'ghi', 'Gohir.D11G313700' => 'ghi', 'Gohir.D12G069300' => 'ghi', 'Gohir.D13G039500' => 'ghi', 'Gohir.D13G107500' => 'ghi', 'Gohir.D13G174900' => 'ghi', 'Gorai.002G267600' => 'gra', 'Gorai.003G024600' => 'gra', 'Gorai.004G143500' => 'gra', 'Gorai.004G200200' => 'gra', 'Gorai.004G246900' => 'gra', 'Gorai.005G237600' => 'gra', 'Gorai.007G213000' => 'gra', 'Gorai.007G278300' => 'gra', 'Gorai.007G345000' => 'gra', 'Gorai.008G075900' => 'gra', 'Gorai.011G105800' => 'gra', 'Gorai.013G044400' => 'gra', 'Gorai.013G120500' => 'gra', 'Gorai.013G200200' => 'gra', 'GSVIVG01036220001' => 'vvi', 'HanXRQChr02g0058001' => 'han', 'HanXRQChr03g0075831' => 'han', 'HanXRQChr03g0075851' => 'han', 'HanXRQChr04g0128171' => 'han', 'HanXRQChr05g0160061' => 'han', 'HanXRQChr07g0186101' => 'han', 'HanXRQChr09g0244611' => 'han', 'HanXRQChr09g0263841' => 'han', 'HanXRQChr10g0295421' => 'han', 'HanXRQChr12g0375661' => 'han', 'HanXRQChr12g0378821' => 'han', 'HanXRQChr14g0437011' => 'han', 'HanXRQChr14g0442811' => 'han', 'HanXRQChr14g0447831' => 'han', 'HanXRQChr16g0502631' => 'han', 'Haze_00739' => 'cav', 'Haze_05524' => 'cav', 'Haze_10091' => 'cav', 'Haze_15399' => 'cav', 'Hma1.2p1_0474F.1_g160440' => 'hma', 'Hma1.2p1_0754F.1_g213120' => 'hma', 'Hma1.2p1_0817F.1_g223170' => 'hma', 'HPP92_004225' => 'vpl', 'HPP92_005395' => 'vpl', 'HPP92_008991' => 'vpl', 'HPP92_008997' => 'vpl', 'HPP92_009008' => 'vpl', 'HPP92_010967' => 'vpl', 'HPP92_013036' => 'vpl', 'HPP92_016388' => 'vpl', 'HPP92_023708' => 'vpl', 'Hund03145' => 'sun', 'Hund16324' => 'sun', 'Lalb_Chr02g0144341' => 'lal', 'Lalb_Chr02g0148881' => 'lal', 'Lalb_Chr04g0262231' => 'lal', 'Lalb_Chr06g0168101' => 'lal', 'Lalb_Chr09g0323171' => 'lal', 'Lalb_Chr09g0328361' => 'lal', 'Lalb_Chr16g0378531' => 'lal', 'Lalb_Chr16g0384761' => 'lal', 'Lalb_Chr18g0043941' => 'lal', 'Lj1g0021839' => 'lja', 'Lj2g0010115' => 'lja', 'Lj4A149T27' => 'lonja', 'Lj4g0026197' => 'lja', 'Lj5g0002289' => 'lja', 'Lj5g0008666' => 'lja', 'Lj6A59T26' => 'lonja', 'Lj7P585T33' => 'lonja', 'Lj9A357T87' => 'lonja', 'Lsat_1_v5_gn_1_71681' => 'lsa', 'Lsat_1_v5_gn_2_51320' => 'lsa', 'Lsat_1_v5_gn_2_84120' => 'lsa', 'Lsat_1_v5_gn_3_90900' => 'lsa', 'Lsat_1_v5_gn_4_166460' => 'lsa', 'Lsat_1_v5_gn_4_31321' => 'lsa', 'Lsat_1_v5_gn_6_55301' => 'lsa', 'Lsat_1_v5_gn_7_49960' => 'lsa', 'Lsat_1_v5_gn_7_86781' => 'lsa', 'Lsat_1_v5_gn_9_109660' => 'lsa', 'Manes.04G041140' => 'mes', 'Manes.08G136100' => 'mes', 'Manes.09G151400' => 'mes', 'Manes.10G056800' => 'mes', 'Manes.11G117600' => 'mes', 'Manes.12G100600' => 'mes', 'Manes.13G124400' => 'mes', 'MBI02_g21886_MAGBIO' => 'mbi', 'MBI03_g13468_MAGBIO' => 'mbi', 'MBI08_g17987_MAGBIO' => 'mbi', 'MBI08_g30816_MAGBIO' => 'mbi', 'MBI11_g35024_MAGBIO' => 'mbi', 'MBI13_g09076_MAGBIO' => 'mbi', 'MBI13_g26682_MAGBIO' => 'mbi', 'MBI14_g32391_MAGBIO' => 'mbi', 'MBI16_g29131_MAGBIO' => 'mbi', 'MBI16_g29132_MAGBIO' => 'mbi', 'MBI17_g34583_MAGBIO' => 'mbi', 'MD02G1171900' => 'mdo', 'MD04G1226100' => 'mdo', 'MD05G1081800' => 'mdo', 'MD12G1243200' => 'mdo', 'MD15G1283800' => 'mdo', 'Medtr1g080750' => 'mtr', 'Medtr1g116590' => 'mtr', 'Medtr4g085970' => 'mtr', 'Medtr5g017450' => 'mtr', 'Medtr7g115290' => 'mtr', 'MELO3C001078.2' => 'cme', 'MELO3C003930.2' => 'cme', 'MELO3C011635.2' => 'cme', 'MELO3C017731.2' => 'cme', 'MELO3C020877.2' => 'cme', 'MELO3C024658.2' => 'cme', 'Migut.B00354' => 'egut', 'Migut.B01111' => 'egut', 'Migut.N01185' => 'egut', 'Migut.N01916' => 'egut', 'MSTRG.20458' => 'ama', 'MSTRG.23747' => 'ama', 'MSTRG.27727' => 'ama', 'Nitab4.5_0000087g0180' => 'nta', 'Nitab4.5_0000749g0190' => 'nta', 'Nitab4.5_0001070g0080' => 'nta', 'Nitab4.5_0002016g0070' => 'nta', 'Nitab4.5_0002247g0070' => 'nta', 'Nitab4.5_0002368g0040' => 'nta', 'Nitab4.5_0002543g0070' => 'nta', 'Nitab4.5_0003080g0110' => 'nta', 'Nitab4.5_0003279g0040' => 'nta', 'Nitab4.5_0003503g0020' => 'nta', 'Nitab4.5_0004579g0030' => 'nta', 'Nitab4.5_0007480g0070' => 'nta', 'Nitab4.5_0009939g0020' => 'nta', 'Nitab4.5_0011642g0010' => 'nta', 'Nitab4.5_0016393g0010' => 'nta', 'Nn1g04845' => 'nnu', 'Nn3g16319' => 'nnu', 'Nn5g30303' => 'nnu', 'Oeu007290.1' => 'oeu', 'Oeu008541.1' => 'oeu', 'Oeu013714.1' => 'oeu', 'Oeu016177.1' => 'oeu', 'Oeu016444.1' => 'oeu', 'Oeu031523.1' => 'oeu', 'Oeu031524.1' => 'oeu', 'Oeu050785.1' => 'oeu', 'Os01g0898800' => 'osa', 'Os02g0766600' => 'osa', 'Os04g0282200' => 'osa', 'Os11g0245400' => 'osa', 'Os11g0282300' => 'osa', 'Os12g0230600' => 'osa', 'Peaxi162Scf00016g01911' => 'pax', 'Peaxi162Scf00071g00831' => 'pax', 'Peaxi162Scf00282g00619' => 'pax', 'Peaxi162Scf00375g00616' => 'pax', 'Peaxi162Scf00450g00417' => 'pax', 'PGR004G1172' => 'pgr', 'PGR083G0517' => 'pgr', 'PGR102G0584' => 'pgr', 'PGR142G1464' => 'pgr', 'PGR142G4284' => 'pgr', 'PGSC0003DMG400004022' => 'stu', 'PGSC0003DMG400025787' => 'stu', 'PGSC0003DMG400027006' => 'stu', 'PGSC0003DMG400027512' => 'stu', 'Phvul.002G019000' => 'pvu', 'Phvul.002G094700' => 'pvu', 'Phvul.006G102600' => 'pvu', 'Phvul.007G003800' => 'pvu', 'Phvul.007G188200' => 'pvu', 'Potri.005G055100' => 'ptr', 'Potri.005G138100' => 'ptr', 'Potri.007G043900' => 'ptr', 'Potri.007G126700' => 'ptr', 'Potri.009G101300' => 'ptr', 'Potri.013G042400' => 'ptr', 'Potri.017G032800' => 'ptr', 'Prupe.1G189800' => 'ppe', 'Prupe.6G344900' => 'ppe', 'Prupe.7G133400' => 'ppe', 'Prupe.8G126400' => 'ppe', 'Psat0s1144g0200' => 'psa', 'Psat2g166320' => 'psa', 'Psat6g062200' => 'psa', 'Psat6g144960' => 'psa', 'Psat7g123880' => 'psa', 'PSO017G3190' => 'pso', 'PSO541G0675' => 'pso', 'PSO541G4445' => 'pso', 'PSO675G5879' => 'pso', 'PSO675G7158' => 'pso', 'PSO675G8701' => 'pso', 'QL03p027308' => 'qlo', 'QL03p027467' => 'qlo', 'QL06p041391' => 'qlo', 'QL10p048174' => 'qlo', 'QL11p035343' => 'qlo', 'RcHm_v2.0_Chr0c40g0503391' => 'rch', 'RcHm_v2.0_Chr2g0105661' => 'rch', 'RcHm_v2.0_Chr3g0450641' => 'rch', 'RcHm_v2.0_Chr4g0407341' => 'rch', 'RcHm_v2.0_Chr6g0257581' => 'rch', 'Rhsim01G0121000' => 'rsi', 'Rhsim02G0076000' => 'rsi', 'Rhsim09G0029700' => 'rsi', 'Rhsim10G0118200' => 'rsi', 'Rhsim11G0165100' => 'rsi', 'Sabra05G0047700' => 'sbr', 'Sabra05G0112500' => 'sbr', 'Sabra07G0038600' => 'sbr', 'Sabra07G0102800' => 'sbr', 'Sabra09G0077100' => 'sbr', 'Sabra13G0038800' => 'sbr', 'Sabra17G0020600' => 'sbr', 'SalBow3G0088' => 'sbo', 'SalBow4G2343' => 'sbo', 'SalBow4G2527' => 'sbo', 'SalBow6G2396' => 'sbo', 'SalBow8G5574' => 'sbo', 'Sc03g0001570' => 'sci', 'Sc06g0003770' => 'sci', 'Sc20g0000430' => 'sci', 'Sc25g0002930' => 'sci', 'Sed0003267' => 'sed', 'Sed0011188' => 'sed', 'Sed0014040' => 'sed', 'Sed0015536' => 'sed', 'Sed0019151' => 'sed', 'Sed0020243' => 'sed', 'Sed0023768' => 'sed', 'Sed0024492' => 'sed', 'Sed0027949' => 'sed', 'SEGI_26069' => 'sgi', 'SEGI_27890' => 'sgi', 'SEGI_38267' => 'sgi', 'SGA_v2.0_scaffold1056G53816' => 'sas', 'SGA_v2.0_scaffold15G07301' => 'sas', 'SGA_v2.0_scaffold336G49162' => 'sas', 'SGA_v2.0_scaffold393G50691' => 'sas', 'SGA_v2.0_scaffold80G25901' => 'sas', 'SGA_v2.0_scaffold90G27638' => 'sas', 'SHI18440' => 'shi', 'SMO119G0518' => 'smo', 'SMO134G0071' => 'smo', 'SMO200G0163' => 'smo', 'SMO274G0043' => 'smo', 'SMO367G0925' => 'smo', 'Solyc01g097180.2' => 'sly', 'Solyc01g108090.2' => 'sly', 'Solyc02g090840.3' => 'sly', 'Solyc06g073450.4' => 'sly', 'Sopen01g040850' => 'spe', 'Sopen01g050320' => 'spe', 'Sopen02g035460' => 'spe', 'Sopen06g029810' => 'spe', 'Sp1g04700' => 'spa', 'Sp1g07430' => 'spa', 'Sp2g20080' => 'spa', 'Sp3g03545' => 'spa', 'Sp3g28880' => 'spa', 'Sp4g14030' => 'spa', 'Sp4g25440' => 'spa', 'Sp5g11830' => 'spa', 'Sp7g31730' => 'spa', 'TAR362G1173' => 'tar', 'TAR376G0970' => 'tar', 'TAR381G0679' => 'tar', 'TAR383G0947' => 'tar', 'TAR626G1047' => 'tar', 'TAR628G0789' => 'tar', 'TAR633G0580' => 'tar', 'THA.LOC104799259' => 'tha', 'THA.LOC104802305' => 'tha', 'THA.LOC104803633' => 'tha', 'THA.LOC104805823' => 'tha', 'THA.LOC104807268' => 'tha', 'THA.LOC104819576' => 'tha', 'THA.LOC104821552' => 'tha', 'THA.LOC104823462' => 'tha', 'Thecc.01G055800' => 'tca', 'Thecc.02G101500' => 'tca', 'Thecc.05G003600' => 'tca', 'Thecc.05G280900' => 'tca', 'Thhalv10001651m.g' => 'esa', 'Thhalv10004951m.g' => 'esa', 'Thhalv10008864m.g' => 'esa', 'Thhalv10009929m.g' => 'esa', 'Thhalv10011124m.g' => 'esa', 'Thhalv10017248m.g' => 'esa', 'Thhalv10021572m.g' => 'esa', 'Thhalv10022992m.g' => 'esa', 'Thhalv10026462m.g' => 'esa', 'TPR.G12720' => 'tpr', 'TPR.G12922' => 'tpr', 'TPR.G29522' => 'tpr', 'TPR.G6913' => 'tpr', 'TWI09G0342' => 'twi', 'TWI12G0707' => 'twi', 'TWI31G1407' => 'twi', 'TWI56G0066' => 'twi', 'TWI73G0618' => 'twi', 'TWI79G0995' => 'twi', 'unitig_21.g20049' => 'ugi', 'unitig_27.g25326' => 'ugi', 'unitig_699.g19240' => 'ugi', 'unitig_699.g19566' => 'ugi', 'unitig_899.g14661' => 'ugi', 'unitig_899.g15583' => 'ugi', 'vmacro00607' => 'vma', 'vmacro02042' => 'vma', 'vmacro05336' => 'vma', 'vmacro15643' => 'vma', 'vmacro17954' => 'vma', 'vmacro20841' => 'vma', 'VMungo0251G0158' => 'vmu', 'VMungo0540G1219' => 'vmu', 'VMungo0720G0648' => 'vmu', 'VMungo0720G3096' => 'vmu', 'VMungo1215G3359' => 'vmu', 'Zm00001eb087100' => 'zma', 'Zm00001eb144580' => 'zma', 'Zm00001eb168830' => 'zma', 'Zm00001eb193640' => 'zma', 'Zm00001eb203030' => 'zma', 'Zm00001eb255960' => 'zma', 'Zm00001eb365650' => 'zma' ) $gf_id = 'HOM05D000925' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000925' ) $data_identifier = 'HOM05D000925' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 11, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 4, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 9, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 11, 'mdo' => (int) 5, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb365650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1